PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC733_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 236aa    MW: 25723.4 Da    PI: 6.0741
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC733_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.82.1e-372783662
     zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++++
  RrC733_p3 27 PSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRTK 83
               58***************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-212373IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.632781IPR003851Zinc finger, Dof-type
PfamPF027011.6E-312881IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102965IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MERTEALTSS FIWRPNANAN ANAEITPSCP RCGSSNTKFC YYNNYSLTQP RYFCKGCRRY  60
WTKGGSLRNV PVGGGCRKSR RTKSSSSNSK TGVTASSCSS GGGSPNIDLA LVYANFLNPK  120
PDEPTLQETC DLATGVSMKP SWSMDIGDHY DHQVEHIVEE CGYNGLPPFP GEELLSIDTN  180
SVWSDALLIG HHHVEVGGVS PARTVHEPVV HFADESNDST NFLLGSWSPF DFSTDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597296.11e-147PREDICTED: dof zinc finger protein DOF3.5
RefseqXP_013705781.11e-147PREDICTED: dof zinc finger protein DOF3.5
SwissprotQ9SVC51e-142DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A078GVE11e-147A0A078GVE1_BRANA; BnaC07g32880D protein
TrEMBLA0A0D3DE601e-147A0A0D3DE60_BRAOL; Uncharacterized protein
STRINGBra012804.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91412238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-126Dof family protein